HIV infection {40000212}

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Definition:	HIV infection
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Other Terms:	[ ]
Initialisation date:	[ ]

Meta Information
ICD:	[ ]
Category:	[ ]
MedDra ID:	10000807
MedDra Level:	pt

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Common References

[1.1] Comparison of lower genital tract microbiota in HIV-infected and uninfected women from Rwanda and the US [2014] [PLOS ONE] [Journal] [80000650]
[1.2] Alterations in the gut microbiota associated with HIV-1 infection [2013] [Cell Host & Microbe] [Journal] [80000339]
[1.3] An altered intestinal mucosal microbiome in HIV-1 infection is associated with mucosal and systemic immune activation and endotoxemia. [2014] [Mucosal Immunology] [Journal] [80000343]
[1.4] Among older adults, age-related changes in the stool microbiome differ by HIV-1 serostatus [2019] [EBioMedicine] [Journal] [80000999]
[1.5] HIV infection is associated with compositional and functional shifts in the rectal mucosal microbiota [2013] [Microbiome] [Journal] [80000337]
[1.6] Composition of gut microbiota of children and adolescents with perinatal HIV infection taking antiretroviral therapy in Zimbabwe [2019] [Journal of Infectious Diseases] [Journal] [80001052]
[1.7] Altered gut microbiota and host metabolite profiles in women with human immunodeficiency virus [2020] [Clinical Infectious Diseases] [Journal] [80001298]
[1.8] Intestinal microbiota, microbial translocation, and systemic inflammation in chronic HIV infection. [2015] [The Journal of Infectious Diseases] [Journal] [80000342]
[1.9] A compositional look at the human gastrointestinal microbiome and immune activation parameters in HIV infected subjects. [2014] [PLOS ONE] [Journal] [80000332]
[1.10] Metabarcoding analysis of eukaryotic microbiota in the gut of HIV-infected patients [2018] [PLOS ONE] [Journal] [80000743]
[1.11] Oraly mycobiome analysis of HIV-infected patients: identification of Pichia as an antagonist of opportunistic Fungi [2014] [PLOS ONE] [Journal] [80001216]
[1.12] The palatine tonsil bacteriome, but not the mycobiome, is altered in HIV infection [2018] [BMC Microbiology] [Journal] [80001098]
[1.13] Effects of HIV viremia on the gastrointestinal microbiome of young MSM [2019] [AIDS] [Journal] [80000959]
[1.14] Impact of human immunodeficiency virus-related gut microbiota alterations on metabolic comorbid conditions [2020] [Clinical Infectious Diseases] [Journal] [80001357]
[1.15] Dysbiosis of the gut microbiota is associated with HIV disease progression and tryptophan catabolism [2013] [Science translational medicine] [Journal] [80000345]
[1.16] Alterations in the Fecal Microbiota of Patients with HIV-1 Infection: An Observational Study in A Chinese Population [2016] [Scientific Reports] [Journal] [80000387]
[1.17] Fecal bacterial microbiome diversity in chronic HIV-infected patients in China. [2016] [Emerging microbes & infections] [Journal] [80000435]
[1.18] Altered immunity and microbial dysbiosis in aged individuals with long-term controlled HIV infection [2019] [Frontiers in Immunology] [Journal] [80000974]
[1.19] The oral microbiome in human immunodeficiency virus (HIV)-positive individuals [2015] [Journal of Medical Microbiology] [Journal] [80000483]
[1.20] Evolution of the gut microbiome following acute HIV-1 infection [2019] [Microbiome] [Journal] [80001103]
[1.21] Dysbiosis in the oral bacterial and fungal microbiome of HIV-infected subjects is associated with clinical and immunologic variables of HIV infection [2018] [PLOS ONE] [Journal] [80000883]
[1.22] Oral microbiome in HIV-infected women: shifts in the abundance of pathogenic and beneficial bacteria are associated with aging, HIV load, CD4 count, and antiretroviral therapy [2019] [AIDS Research and Human Retroviruses] [Journal] [80000982]
[1.23] Comparison of the diversity of the vaginal microbiota in HIV-infected and uninfected women with and without bacterial vaginosis. [2008] [The Journal of Infectious Diseases] [Journal] [80000370]
[1.24] Detection and identification of plasma bacterial and viral elements in HIV/AIDS patients in comparison to healthy adults [2012] [Infectious Diseases] [Journal] [80000340]
[1.25] Widespread colonization of the lung by Tropheryma whipplei in HIV infection [2013] [American Journal of Respiratory and Critical Care Medicine] [Journal] [80000351]
[1.26] Lower prevalence of Blastocystis sp. infections in HIV positive compared to HIV negative adults in Ghana [2019] [PLOS ONE] [Journal] [80001212]
[1.27] Decreased microbiome diversity in the HIV small airway epithelium [2018] [Respiratory Research] [Journal] [80000817]
[1.28] Pyrosequencing of the genital microbiotas of HIV-seropositive and -seronegative women reveals Lactobacillus iners as the predominant Lactobacillus species. [2011] [Applied and Environmental Microbiology] [Journal] [80000374]

Increased abundance of

‐ Achromobacter Cervicovaginal lavage ‎Human [1.1]
‐ Acidaminococcus fermentans Faeces ‎Human [1.2]
‐ Acinetobacter Tissue biopsie ‎Human [1.3]
‐ Allisonella histaminiformans Faeces ‎Human [1.2]
‐ Allisonella Faeces ‎Human [1.4]
‐ Anaerococcus Rectal lavage sample ‎Human [1.5]
‐ Anaerococcus Rectal swab ‎Human [1.6]
‐ Anaerotruncus Faeces ‎Human [1.7]
‐ Anaerovibrio Faeces ‎Human [1.4]
‐ Asaccharobacter Cervicovaginal lavage ‎Human [1.1, 1.1]
‐ Barnesiella Faeces ‎Human [1.8]
‐ Brachyspira Faeces ‎Human [1.9]
‐ Brucellaceae Tissue biopsie ‎Human [1.3]
‐ Bulleidia Faeces ‎Human [1.2]
‐ Campylobacter Faeces ‎Human [1.9]
‐ Candida albicans Faeces ‎Human [1.10]
‐ Candida tropicalis Faeces ‎Human [1.10]
‐ Candida Oral wash ‎Human [1.11]
‐ Capnocytophaga ochracea Palatine tonsil swab ‎Human [1.12]
‐ Capnocytophaga Oral wash ‎Human [1.11]
‐ Catenibacterium mitsuokai Faeces ‎Human [1.2]
‐ Catenibacterium Faeces ‎Human [1.9]
‐ Citrobacter Cervicovaginal lavage ‎Human [1.1]
‐ Corynebacterium Rectal swab ‎Human [1.6, 1.13]
‐ Desulfovibrio piger Faeces ‎Human [1.2]
‐ Dialister propionicifaciens Faeces ‎Human [1.2]
‐ Dietzia Rectal swab ‎Human [1.13]
‐ Eisenbergiella Faeces ‎Human [1.14]
‐ Enterobacter Faeces ‎Human [1.4]
‐ Enterobacteriaceae Faeces ‎Human [1.8, 1.9]
‐ Erysipelotrichaceae Faeces ‎Human [1.8]
‐ Erysipelotrichaceae Tissue biopsie ‎Human [1.15]
‐ Escherichia Faeces ‎Human [1.9]
‐ Escherichia Tissue biopsie ‎Human [1.15]
‐ Eubacterium biforme Faeces ‎Human [1.2]
‐ Finegoldia Rectal swab ‎Human [1.6, 1.13]
‐ Firmicutes Faeces ‎Human [1.16, 1.17]
‐ Fusobacteriaceae Faeces ‎Human [1.9]
‐ Fusobacterium Faeces ‎Human [1.4]
‐ Fusobacterium Rectal lavage sample ‎Human [1.5]
‐ Fusobacterium Rectal swab ‎Human [1.18]
‐ Gammaproteobacteria Faeces ‎Human [1.8]
‐ Gardnerella Rectal swab ‎Human [1.18]
‐ Haemophilus parainfluenzae Saliva ‎Human [1.19]
‐ Haemophilus Faeces ‎Human [1.20]
‐ Helicobacter Rectal swab ‎Human [1.18]
‐ Howardella Faeces ‎Human [1.4]
‐ Klebsiella Tissue biopsie ‎Human [1.15]
‐ Lactobacillus Rectal swab ‎Human [1.18]
‐ Malassezia restricta Faeces ‎Human [1.10]
‐ Megasphaera elsdenii Faeces ‎Human [1.2]
‐ Mitsuokella jalaludinii Faeces ‎Human [1.2]
‐ Mogibacterium Faeces ‎Human [1.9]
‐ Murdochiella Rectal swab ‎Human [1.13]
‐ Mycoplasma Cervicovaginal lavage ‎Human [1.1]
‐ Nakaseomyces Faeces ‎Human [1.10]
‐ Negativicoccus Rectal swab ‎Human [1.13]
‐ Neisseria cinerea Palatine tonsil swab ‎Human [1.12]
‐ Oscillibacter Faeces ‎Human [1.14]
‐ Oscillospira Faeces ‎Human [1.7]
‐ Paraprevotella Faeces ‎Human [1.4]
‐ Pelomonas Oral wash ‎Human [1.21]
‐ Peptoniphilus Rectal swab ‎Human [1.13]
‐ Peptostreptococcus Rectal lavage sample ‎Human [1.5]
‐ Porphyromonas Rectal lavage sample ‎Human [1.5]
‐ Porphyromonas Rectal swab ‎Human [1.13]
‐ Prevotella copri Faeces ‎Human [1.2]
‐ Prevotella melaninogenica Saliva ‎Human [1.22]
‐ Prevotella stercorea Faeces ‎Human [1.2]
‐ Prevotella Faeces ‎Human [1.4, 1.9]
‐ Prevotella Rectal swab ‎Human [1.13]
‐ Prevotella Tissue biopsie ‎Human [1.3]
‐ Propionibacteriaceae Cervicovaginal lavage ‎Human [1.23]
‐ Propionibacterium Cervicovaginal lavage ‎Human [1.1]
‐ Proteobacteria Faeces ‎Human [1.17]
‐ Pseudoflavonifractor Rectal swab ‎Human [1.13]
‐ Pseudomonadales Plasma ‎Human [1.24]
‐ Ralstonia Faeces ‎Human [1.9]
‐ Rothia mucilaginosa Saliva ‎Human [1.22]
‐ Ruminococcus callidus Faeces ‎Human [1.2]
‐ Ruminococcus Faeces ‎Human [1.7]
‐ Salmonella Tissue biopsie ‎Human [1.15]
‐ Selenomonas noxia Palatine tonsil swab ‎Human [1.12]
‐ Serratia Tissue biopsie ‎Human [1.15]
‐ Shigella Tissue biopsie ‎Human [1.15]
‐ Sneathia Rectal swab ‎Human [1.18]
‐ Stenotrophomonas Oral wash ‎Human [1.21]
‐ Streptococcus Palatine tonsil swab ‎Human [1.12]
‐ Streptococcus Rectal swab ‎Human [1.13]
‐ Tropheryma whipplei Bronchoalveolar lavage ‎Human [1.25]
‐ Veillonella Faeces ‎Human [1.20]
‐ Xanthomonadaceae Tissue biopsie ‎Human [1.3]

Decreased abundance of

‐ Aggregatibacter Oral wash ‎Human [1.11]
‐ Akkermansia Faeces ‎Human [1.9, 1.20]
‐ Alistipes Faeces ‎Human [1.2, 1.4, 1.8]
‐ Alistipes Rectal lavage sample ‎Human [1.5]
‐ Alistipes Tissue biopsie ‎Human [1.3]
‐ Alternaria Faeces ‎Human [1.10]
‐ Anaerovibrio Faeces ‎Human [1.20]
‐ Arcanobacterium Rectal swab ‎Human [1.13]
‐ Ascomycota Faeces ‎Human [1.10]
‐ Bacteroides Faeces ‎Human [1.2, 1.4, 1.9]
‐ Bacteroides Rectal swab ‎Human [1.13]
‐ Bacteroides Tissue biopsie ‎Human [1.3]
‐ Bacteroidetes Faeces ‎Human [1.16]
‐ Barnesiellaceae Faeces ‎Human [1.9]
‐ Barnesiella Faeces ‎Human [1.4]
‐ Barnesiella Rectal swab ‎Human [1.13]
‐ Barnesiella Tissue biopsie ‎Human [1.3]
‐ Bifidobacterium Faeces ‎Human [1.7, 1.20]
‐ Bilophila Faeces ‎Human [1.17]
‐ Blastocystis Faeces ‎Human [1.26]
‐ Blautia Faeces ‎Human [1.9]
‐ Blautia Tissue biopsie ‎Human [1.3]
‐ Brachyspira Rectal swab ‎Human [1.13]
‐ Butyrivibrio Faeces ‎Human [1.14]
‐ Campylobacter Bronchial brush ‎Human [1.27]
‐ Campylobacter Rectal swab ‎Human [1.13]
‐ Campylobacter Tissue biopsie ‎Human [1.15]
‐ Christensenellaceae Tissue biopsie ‎Human [1.3]
‐ Clostridium Faeces ‎Human [1.20]
‐ Collinsella Faeces ‎Human [1.7]
‐ Coprococcus Faeces ‎Human [1.9, 1.14]
‐ Coprococcus Rectal lavage sample ‎Human [1.5]
‐ Coprococcus Tissue biopsie ‎Human [1.3]
‐ Dialister Faeces ‎Human [1.9]
‐ Dorea Faeces ‎Human [1.9]
‐ Eggerthella Cervicovaginal lavage ‎Human [1.1]
‐ Eggerthella Faeces ‎Human [1.4]
‐ Eggerthella Rectal swab ‎Human [1.18]
‐ Enhydrobacter Oral wash ‎Human [1.21]
‐ Enhydrobacter Rectal swab ‎Human [1.18]
‐ Eubacterium Rectal lavage sample ‎Human [1.5]
‐ Faecalibacterium Faeces ‎Human [1.4, 1.9]
‐ Faecalibacterium Rectal swab ‎Human [1.13]
‐ Flavonifractor Rectal swab ‎Human [1.13]
‐ Fusobacterium Bronchial brush ‎Human [1.27]
‐ Fusobacterium Palatine tonsil swab ‎Human [1.12]
‐ Haemophilus Palatine tonsil swab ‎Human [1.12]
‐ Helicobacter Rectal swab ‎Human [1.13]
‐ Lachnobacterium Cervicovaginal lavage ‎Human [1.1, 1.1]
‐ Lachnospiraceae Tissue biopsie ‎Human [1.3]
‐ Lachnospira Faeces ‎Human [1.9]
‐ Lachnospira Rectal lavage sample ‎Human [1.5]
‐ Lactobacillus crispatus Cervicovaginal lavage ‎Human [1.1, 1.1]
‐ Lactobacillus iners Cervicovaginal lavage ‎Human [1.28]
‐ Mobiluncus Cervicovaginal lavage ‎Human [1.1]
‐ Mycoplasma Cervicovaginal lavage ‎Human [1.1]
‐ Neisseria Palatine tonsil swab ‎Human [1.12]
‐ Odoribacter Faeces ‎Human [1.4, 1.9]
‐ Oscillospira Faeces ‎Human [1.4, 1.9]
‐ Oxalobacter Faeces ‎Human [1.4]
‐ Oxalobacter Rectal swab ‎Human [1.13, 1.18]
‐ Parabacteroides Faeces ‎Human [1.2]
‐ Parabacteroides Rectal swab ‎Human [1.13]
‐ Parasutterella Rectal swab ‎Human [1.13]
‐ Parvimonas Oral wash ‎Human [1.21]
‐ Penicillium brevicompactum Faeces ‎Human [1.10]
‐ Peptostreptococcaceae Faeces ‎Human [1.9]
‐ Pichia Faeces ‎Human [1.10]
‐ Prevotella Bronchial brush ‎Human [1.27]
‐ Prevotella Faeces ‎Human [1.16]
‐ Propionibacterium Cervicovaginal lavage ‎Human [1.1]
‐ Pseudomonas Tissue biopsie ‎Human [1.15]
‐ Pyramidobacter Faeces ‎Human [1.7]
‐ Rikenellaceae Faeces ‎Human [1.8, 1.9]
‐ Romboutsia Faeces ‎Human [1.14]
‐ Roseburia Faeces ‎Human [1.4, 1.9]
‐ Roseburia Rectal lavage sample ‎Human [1.5]
‐ Ruminococcaceae Faeces ‎Human [1.14]
‐ Ruminococcaceae Tissue biopsie ‎Human [1.3]
‐ Ruminococcus Faeces ‎Human [1.9]
‐ Ruminococcus Rectal lavage sample ‎Human [1.5]
‐ Shigella Rectal swab ‎Human [1.13]
‐ Staphylococcus Tissue biopsie ‎Human [1.15]
‐ Stemphylium Oral wash ‎Human [1.21]
‐ Streptococcus mitis Saliva ‎Human [1.19]
‐ Streptococcus Rectal swab ‎Human [1.18]
‐ Succinivibrio Rectal swab ‎Human [1.13]
‐ Thalassospira Tissue biopsie ‎Human [1.3]
‐ Turicibacter Rectal swab ‎Human [1.13]
‐ Veillonella parvula Palatine tonsil swab ‎Human [1.12]
‐ Veillonella Bronchial brush ‎Human [1.27]
‐ Verrucomicrobia Bronchial brush ‎Human [1.27]
‐ Vivictivallis Rectal swab ‎Human [1.13]

Related Factor

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Subclass

‐ [40000250] HIV-infected pneumonia

Related Metabolome

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Shared References

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References

[ ]

HIV infection {40000212}

Record Keys

Details

Meta Information

Notes

Shared Notes

Common References